A novel approach to predict protein backbone conformation

There are two server operation modes:

Predict Local Structure Classes	actually predicting structural classes by sequence. The amino acid sequence is fed to the input.
Compare prediction for Known Structure	is a prediction quality analysis for a known protein chain structure. A PDB file is input.

Input for Predict Local Structure Classes mode

Provide in the textbox protein sequences in free FASTA format as shown below.

Another way to enter the amino acid sequence is to download the FASTA file.

Below is an example screenshot.

Input for Compare prediction for Known Structure mode

You must select a PBD file and do not forget to select the ID of chain

Than click the predict button and wait approximately 10 seconds.

An example of filling out the form is shown below.

Results

The presentation of the results for the Predict Local Structure Classes mode and Compare prediction for Known Structure

mode is almost the same. The difference is that in the second case, you can compare the predicted classes of the

local structure with the data from the PDB file. The value Q16 is calculated - the percentage of correct predictions for 16 classes

On the graph, you can select and enlarge the area of interest.

Below is a graph of the area highlighted in the previous graph